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Anthropic's Claude enzyme discovery: about 950 AI agents flag a system with CRISPR-like repeats in 21 hours

Anthropic's new life sciences lab says Claude agents mined a DNA database and spotted an enzyme system that human scientists then began testing; its function is still unknown.

By · Editor

· 3 min read · Fact-checked

The 60-second brief

  • 1Anthropic said on September 23 that Claude agents found an uncharacterized phage enzyme system with CRISPR-like DNA repeats.
  • 2About 950 agents searched for 21 hours using 210 million tokens, narrowing 3,500 candidates to 20.
  • 3All lab work was done by human scientists, and the system's function has not yet been determined.

The news

Anthropic said on September 23 that its new life sciences lab used Claude to identify a previously uncharacterized enzyme system in viruses that infect bacteria. The Claude enzyme discovery has features Anthropic says are reminiscent of CRISPR, the gene-editing technology.

According to Anthropic, scientists gave Claude an initial prompt to search a large DNA sequence database for new reverse transcriptases, enzymes that copy RNA into DNA. Roughly 950 Claude agents worked for 21 hours and used 210 million tokens, gathering more than 200,000 reverse transcriptases, identifying 3,500 new candidate systems and narrowing them to 20 for detailed reports. Anthropic said this kind of analysis can take an expert weeks to months.

One agent noticed a repeating DNA pattern next to an unusual reverse transcriptase gene. The resulting system, which Anthropic calls ART, consists of the enzyme, a partner gene and a long array of evenly spaced DNA repeats resembling a CRISPR array. Anthropic said the underlying enzyme had been identified in earlier studies, but that Claude appears to be the first to notice the system's defining features. Early experiments show the array is expressed as distinct short RNAs; what the system does is still unknown, and a pre-print has been released.

The lab work was done by people. Anthropic said its Bay Area lab handles only lower biosafety levels, BSL-1 and BSL-2, does not work with pathogens that infect humans, and that all experiments were performed by human scientists. The team uses Claude Science and Claude Code, which Anthropic noted are available to any scientist. CRISPR pioneer Feng Zhang of MIT and the Broad Institute reviewed the pre-print and praised it as a sign that AI agents can contribute to biology research, Anthropic said. The group sits in Anthropic's broader life sciences organization, which the company said also includes teams working on drug discovery and on training Claude in biology and chemistry.

TechCrunch reported that CEO Dario Amodei acknowledged the work built on others' research and that a Stanford team had previously found a system that is in some ways similar. Amodei wrote that the discovery was made mostly, though not entirely, by Claude, TechCrunch said.

The numbers

Claude agents deployed
About 950
Search time
21 hours
Tokens used
210 million
Reverse transcriptases gathered
200,000+
Candidates narrowed
3,500 to 20

Why CEOs should care

For pharma and biotech R&D leaders, the notable number is not the discovery but the throughput: a day of parallel agent work to survey a protein family that Anthropic says would take a specialist weeks or months. Heads of discovery should run a controlled pilot on a well-understood problem, compare agent output with past human work, and measure how many agent-generated hypotheses survive expert review and lab testing. Ask any vendor whether agent runs can be reproduced and whether the evidence behind each candidate is logged for scientists to review.

CFOs should budget for the full pipeline, not just compute. Anthropic said its scientists' involvement was limited to the initial prompt and the lab work, with agents narrowing 3,500 candidates to 20 detailed reports, but finding out what any candidate actually does still depends on human-run wet-lab experiments. The cost savings come from narrowing what humans test, so the business case rests on hit rates and the capacity of lab teams downstream.

Chief risk officers and boards should note the safeguards Anthropic describes: low-biosafety work only, human-run experiments and a separate verification program that gives life-science professionals access to models with safeguards adjusted for biology work. Any company adopting AI in biology should document similar controls, including who can run which agents on which data, and how outputs involving hazardous biology are screened.

The bigger picture

AI developers are moving from supplying tools to scientists toward doing science themselves. Anthropic has joined a field that TechCrunch noted already includes AI-assisted enzyme design and protein-structure tools, and the company says it wants outside scientists to propose research questions. If agent-led hypothesis generation holds up under peer review, the bottleneck in early discovery shifts from finding candidates to testing them, which favors organizations with strong lab operations and good data.

What’s next

Watch for peer review of the pre-print, follow-up experiments on what the ART system actually does, and any partnerships Anthropic strikes with drug developers or academic labs. According to TechCrunch, Amodei has said Claude might eventually run experiments itself by controlling lab equipment, with appropriate safeguards, but that Anthropic is not doing that now.

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Companies in this story

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Earlier coverage of Anthropic

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Written by

Editor · Technology & Business Writer

Hussein is a writer and business technology enthusiast focused on the intersection of technology, entrepreneurship, finance, artificial intelligence, and digital innovation.

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How this story was made. Researched and written using our newsroom’s technology tools and fact-checked before publication.

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